Biology

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Syllabus

Safety Rules and Contract

Seating Charts: Blocks A2 A4 B1 B2 B4

Curriculum

Unit 1: Introduction to Biology
Unit 2: Math and Measurement
Unit 3: Enzymes
Unit 4: Cell Structure and Function
Unit 5: Cell Energy
Unit 6: Cell Reproduction
Unit 7: Evolution
Unit 8: The Genetic Basis of Heredity
Unit 9: The Molecular Basis of Heredity
Unit 10: Microbiology
Unit 11: The Immune System
Unit 12: Human Anatomy and Physiology
        A. The Cardiovascular System
        B. The Digestive System

 

Unit 1: Introduction to Biology

Contact information and safety contracts
Textbooks: keep at home (checkout during week 3)
What is Science? What is Biology?
Quiz: What is Science?
Fibonacci patterns in nature
Fibonacci Pinecones Activity
Fibonacci Sunflower
Chapter 1-1 What is Science?
Chapter 1-1 Section Assessment Q1-6
Characteristics of all living things
Chapter 1-2 How Scientists Work
Chapter 1-2 Section Assessment Q1-5
Quiz: Chapter 1-1 What is Science?
Check out textbooks

Microscope Lab:
   A. Microscope anatomy and procedure
   B. Microscope anatomy classwork
   C. Wet mounts of pond water microbes
       Color reference sheets

Taxonomy: Classification of Humans 1 2
Taxonomy: The 6 Kingdoms
The 5 Vertebrates
Internet Webquest: Kingdoms/Vertebrate PowerPoint - e-mail submission
Taxonomy Handout for Review
6 Kingdoms Quiz


Unit 2: Math and Measurement
How is algebra important in biology?
Unit prefixes and how to convert between them by dimensional analysis.
Dimensional Analysis Examples
Dimensional Analysis Worksheet 1
Dimensional Analysis Worksheet 2

Dimensional Analysis Quiz 1
Dimensional Analysis Quiz 2
Dimensional Analysis Quiz 3
How to measure volume using the graduated cylinder
Lab Experiment: determine if the size of a seed correlates with germination rate.
First sort them into two size categories (one species). Determine their average volumes. Then germinate them in spring water and examine after 5 days. Calculate and compare % germination in the two samples.

Dimensional Analysis Quiz 4
Dimensional Analysis Quiz 5
Science Crossword Puzzle #2
Science Crossword Puzzle #5
Chapter 1 Standardized test prep questions 1-6
Chapter 2 Standardized test prep questions 1-10

Dimensional Analysis Quiz 6
Dimensional Analysis Quiz 7
Dimensional Analysis Quiz 8
Dimensional Analysis Quiz 9
Dimensional Analysis Quiz 10
Graphical Analysis 1
Dimensional Analysis Quiz 11
Dimensional Analysis Worksheet 3

Unit 3: Enzymes
Modeling macromolecules on paper: Freight train diagram
The four macromolecules and their subunits:
A. protein
B. polysaccharides
C. fatty acids
D. fats/lipids



Protein Structure: 4 levels (1 2):
A. primary
B. secondary
C. tertiary
D. quaternary

Protein folding: finding the lowest energy state
Structure determines function
Effect of heat on protein structure

Functional groups in amino acids


Some types of proteins:
A. Structural proteins (keratin, keratin, keratin, tubulin, tubulin, tubulin, tubulin)
B. Membrane transport proteins (aquaporin aquaporin)
C. Hormones (insulin, testosterone)
D. Enzymes

Protein Structure Quiz 1

Lab Activity: Characteristics of enzymatic and nonenzymatic reactions
A. nonenzymatic: baking soda/vinegar
B. enzymatic: liver catalase/hydrogen peroxide
Summarize conclusions
Lab Activity: Protein denaturation: milk + lemon juice
Draw a diagram illustrating the coagulation effect of acid on casein (milk protein)


Protein Structure Quiz 2

Lysozyme Lab:
A. Lysozyme PowerPoint
B. Lysozyme Lab Worksheet
C. Phase 1 - lysozyme in egg white

D. Phase 2 - lysozyme in human secretions (saliva, tears)
Ch. 7 Classwork/Homework:
p. 173 Q2-4
p. 181 Q1-5
P. 189 Q1,2,3,4,6
p. 193 Q4
p. 197 Q1-25

Protein Structure/Function Unit Test


Unit 4: Cell Structure and Function
Part I. The Cell Membrane
A. Biochemical composition
B. Structure: the "fluid mosaic model"

C. Forces that hold bilayer membranes together:
      1. Hydrophilic nature of water and polar (charged) compounds
      2. Hydrophobic nature of fatty acids and triglycerides
      3. Amphipathic nature of phospholipids

D. Lab: membrane self-assembly
E. PowerPoint: membrane structure and function
F. Selective permeability: passive diffusion, facilitated diffusion, active transport
G. Lab: passive diffusion of iodine through a semi-permeable membrane
H. Cell Biology Powerpoint computer labwork
Osmosis labs:
A. Effect of solute in dialysis bag model
1. Sugar water inside, tap water outside
2. Place in corn syrup (next day)
B. Effect of salt on wilting of lettuce

Quiz: osmosis lab results and interpretation
Membrane Structure and Function Pretest
Osmosis Video
Lettuce Stomate Experiment
Stomate picture
Stomate quiz
Plant stomata video
Plant cell tour
Cell Structure Function PowerPoint - Detailed
Cell Structure and Function Video
Cell Structure and Function Unit Test Sample Questions

Cell Structure and Function Unit Test

Unit 5: Cell Energy
Cell respiration powerpoint
Cell respiration graphic organizer
Cell respiration quiz 1
Cell respiration quiz 2
Cell respiration crossword puzzle
Ch 7 and Ch 9 end of chapter questions


Unit 6: Cell Reproduction

Lecture: Cell Cycle and Mitosis

Cell Reproduction Powerpoint1
Homework: Chapter 10-2, cell cycle and mitosis, answer questions 1-6 at the end of the section
Homework: Chapter 10 end-of-chapter assessment, questions 1-7, 10, 19, 20, 30

Mitosis Youtube videos
Onion Root Tip Mitosis: Chromosome Squash
Quiz: Identify mitotic phases on photos of stained onion tip squashes.
Cell Reproduction Quiz 1(homework)
Cell Reproduction Quiz 2(classwork)
Cell Reproduction Powerpoint 2

Mitosis simulation using colored straws
Online mitosis game
Cell Reproduction Higher Thinking Questions
Review cell cycle and mitosis
Unit Test

Unit 7: Evolution
Read Ch15 pp369-386
Write an essay in which you explain Darwin's concept of the survival of the fittest as the basis for evolution of species. Include examples of evolution by natural selection
Write an essay in which you discuss the concepts of artificial selection and survival of the fittest (and sexual selection for extra credit). Use at least two examples of each to illustrate these concepts.


Mostly Videos:
Homer Simpson Evolution
How Evolution Works
The Fossil Record
Divergent Evolution (Geographic Distribution)
Convergent Evolution (Geographic Distribution)
Homologous Structures
Embryonic Similarities
Discuss the following four lines of evidence for evolution:
A. Fossil Evidence
B. Homologous Structure
C. Embryo Development
D. Geographic Distribution

Evolution Quiz 1

Homework 1: Ch15 Assessment p. 389 Q1, 2, 4, 5, 6, 8, 9, 11, 12, 16, 17, 18, 19, 21, 22, 23, 24
Homework 2: Ch15 Assessment p. 390 Q26, 27, 28, 29, 30, 32, 33, 34



Unit 8: The Genetic Basis of Heredity

Homework: Ch11-1 Q1-6
Homework: Ch11-2 Q1-5
Homework: Ch11-3 Q1-5


Lecture: Mendel's Peas: One-factor crosses; Dominant vs recessive traits; Genes determine traits; Genotype vs Phenotype; Monohybrid Crosses - Punnett Squares

Video: Peas in a Pod - Cracking the Code
Part I Part II Part III

Video: Genetics 101 Part 1: What are genes?

Video: Genetics 101 Part 2: What are SNPs?
Video: Genetics 101 Part 3: Where do your genes come from?
Video: Genetics 101 Part 4: What is phenotype

Segregation of alleles; Test crosses to prove genotype
Explain allele segregation by meiosis: how the chromosomes behave during gamete formation


Class Genetic Profile:
A. Widow's Peak (dominant)
B. Hitchhiker's Thumb (recessive)
C. Bent Pinky (dominant)
D. Attached Earlobes (recessive)
G. Hand clasp left thumb over right (nonmendelian, possibly nongenetic)
H. Arm fold left over right (nonmendelian, possibly nongenetic)
I. Tongue Roller (nongenetic)
J. Cheek Dimples (dominant)
Calculate percentage of class having each trait. Is there a relationship between dominance/recessiveness and population frequency?



Dominant (gain of function) versus recessive (loss of function) mutations: examples in humans - albinism and huntington's disease respectively

One-Factor Crosses Problem Set 1
One-Factor Crosses Problem Set 2


Video: Huntington's Disease
Video: Genetics of Disease: Linus Pauling and Sickle Cell Anemia
Heredity Worksheet 1


PowerPoint: Beyond Mendelian Inheritance
What is Sex-linked inheritance?
Sex-linked inheritance patterns
Sex-linked Inheritance Worksheet 1

Sex-linked Inheritance Worksheet 2


Two-factor crosses(dihybrid) p. 284 Question 22
A. Dihybrid crosses 9:3:3:1 phenotype ratio
B. Test cross (double hybrid x double homozygous recessive)
i. nonparental = parental means no gene linkage - on different chromosomes or far apart on the same chromosome
ii. nonparental < parental means gene linkage - linkage is variable depending on how close the two genes are to each other
The closer they are the lower the chance of crossing over occurring.
This makes possible the construction of linkage maps to estimate distance between genes clustered on the same chromosome.

Linkage mapping problem: series of two-factor crosses
    AB = 11 m.u.
    AC = 33 m.u.
    AD = 36 m.u.
    BC = 44 m.u.
    BD = 25 m.u.
    CD = 50 m.u.



Create your own linkage mapping problem using 6 genes.
Write the final version of the problem and the answer (the linkage map) to the problem on separate sheets of paper.

Each student will choose a 6 point map problem to solve. Distribute at random.
Final linkage mapping problem

Drosophila lab: set up mating vials
Drosophila Lab worksheet

Review fruit fly life cycle.

Start Drosophila Reciprocal Crosses - prepare mating vials
    A. Vial 1: Red-eyed male x White-eyed virgin female
    B. Vial 2: White-eyed male x Red-eyed virgin female


Internet Problem Set 1

Mendelian Genetics Unit Test


Unit 9: The Molecular Basis of Heredity


Read Chapter 12.1 DNA pp. 287-290. Take notes from the chapter on the experiments that were performed (and by which scientists) to elucidate the biochemical nature of the genetic material. Write your notes in outline form and keep in your notebook for inspection. You will be expected to answer questions on these experiments and their outcomes in both quiz and essay formats.

Video/Lecture: chromatin structure.
DNA Synthesis

p. 296 Analyzing Data - DNA Synthesis

    Chapter 12-1 Section Assessment (p.294) Q1-5
    Chapter 12-2 Section Assessment (p 299) Q1-6

Venn diagram on whiteboards - Use textbook and notes to compare and contrast eukaryotic and prokaryotic chromatin structures


Lab: Isolation of DNA from Wheat Germ

Lab: Chromosome Squash from Drosophila Salivary Glands


Unit 10: Microbiology


Construction of Winogradsky Columns for observation of pigmented bacteria from soil
Video - Confessions of a Germ: Tuberculosis
Shape: bacilli vs cocci vs spirilla
Cell Wall Properties: Gram Positive vs Gram Negative
Motility: flagellar motor propulsion vs corkscrewing vs gliding motility vs nonmotile
A. Bacterial Growth and Reproduction
i. Binary fission
ii. Endospore formation
Video: Current news on Swine Flu
Video: The 1918 Flu Pandemic

Discussion of Swine Flu and Human Flu biology

Draw a picture of the influenza virus using colored pencils. Pictures/descriptions of important structures (hemagluttinin, neuraminidase, ribonuclear protein): label the different parts and describe the function of each part.

Read: article on Swine Flu

Discuss influenza virus infection cycle
Video 1: influenza virus infection cycle
Video 2: Animation of influenza virus "hatching out"
Video 3: Why you can get the flu even though you've been vaccinated.

Quiz on Influenza and Swine Flu



Streak samples onto nutrient agar plates; incubate at 30C

Video: exponential growth of bacteria

Video: Bacterial growth curve


Restreak one bacterial colony onto nutrient agar plates: use quadrant method for single colony isolation
Gram stain one colony
Record: Gram positive or Gram negative; Shape (bacilli or cocci, chains, etc.?)


Antibiotic testing - Ampicillin
- Soil samples
Isolation of thermophilic bacteria
- Soil samples



Yogurt-making lab

Cheese-making lab

Video: Dangerous Microbes

Video: The History of AIDS

Video: HIV 101
Video: HIV structure
Video: Molecular biology of HIV infection and viral replication

Video: HIV structure
Video: Molecular biology of HIV infection and viral replication
HIV sexual transmission exercise: "cup o' virus"


Unit 11: The Immune System
Lab: Isolation of IgY antibody from egg yolk
Lab: Agarose Immunodiffusion with anti-IgY


Unit 12: Human Anatomy and Physiology
A. Cardiovascular System

Lab: Effect of nicotine on bloodworm pulse rate
Use of stethoscopes
Use of sphygmomanometer
Lab: Effects on heart rate and blood pressure


B. Digestive System
Digestive System PowerPoint
Frog Dissection